PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009113606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34819.7 Da PI: 6.5089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.4 | 2.1e-17 | 9 | 55 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL+ XP_009113606.1 9 VPPGFRFHPTDEELLHYYLKKKISYQKFEM-EVIREVDLNKLEPWDLQ 55 69****************************.99*************96 PP | |||||||
2 | NAM | 63.4 | 7e-20 | 55 | 103 | 80 | 129 |
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+Wkatg+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle XP_009113606.1 55 QGFWKATGRDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 103 59************9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.384 | 1 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-44 | 8 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-20 | 10 | 102 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQGFWKA 60 TGRDKCIRNS YKKIGMRKTL VFYKGRAPHG QKTDWIMHEY RLEDADDPQG NLSEDGWVVC 120 RVFMKKNLFK VVNDGGSSIN SADQYNHDAS NNNNNTLQAR SFMHGDSPYQ LVRNHGATTF 180 ELNKPDLSLH QYPPIFHKPP SLGVDYSSGF PRDCESAASE GLQYQQACEP GLEVGTSETV 240 ANHNHQQGLG EWSMMDRLVT CHLGNEDSSR GIRFEDGNNN SSAVVQPVPT SNQLSLRSEM 300 DFWGYSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-33 | 9 | 127 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-33 | 9 | 127 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009113606.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133681 | 0.0 | AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009113606.1 | 0.0 | PREDICTED: protein BEARSKIN2-like isoform X2 | ||||
Swissprot | Q9SV87 | 0.0 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0D3E8X6 | 0.0 | A0A0D3E8X6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397Y717 | 0.0 | A0A397Y717_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FA00 | 0.0 | M4FA00_BRARP; Uncharacterized protein | ||||
STRING | Bra037914.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo9g088300.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 0.0 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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