PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113584.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25219.6 Da    PI: 9.7537
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-311059150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_009113584.1 10 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 59
                    79***********************************************8 PP

2K-box59.41.5e-20751622100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     +++s+ s++e +a+++qqe+akL+++i+++q++            s+keL+q+e++Lek++++iRskK+elll++ie+lqk+e el++e  +Lr+
  XP_009113584.1  75 DNTSTHSVQEINAAYYQQESAKLRQQIQTIQNS-----------NSVKELKQVENRLEKAISRIRSKKHELLLAEIENLQKREIELDNESIYLRT 158
                     56777889***********************87...........49************************************************* PP

           K-box  97 klee 100
                     k++e
  XP_009113584.1 159 KIAE 162
                     *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.034262IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-42261IPR002100Transcription factor, MADS-box
CDDcd002654.34E-43376No hitNo description
SuperFamilySSF554551.19E-33389IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-33424IPR002100Transcription factor, MADS-box
PROSITE patternPS003500458IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261158IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-332439IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-333960IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.07770166IPR002487Transcription factor, K-box
PfamPF014864.6E-1186160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN  60
NNIRSTIERY KKASDNTSTH SVQEINAAYY QQESAKLRQQ IQTIQNSNSV KELKQVENRL  120
EKAISRIRSK KHELLLAEIE NLQKREIELD NESIYLRTKI AEVERFQQHH HQMVSGTEMT  180
AIEVLASRNY FAHSIMTTGS GSGAGHGCSY SDPDKKIHLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-22275174Myocyte-specific enhancer factor 2B
1tqe_Q7e-22275174Myocyte-specific enhancer factor 2B
1tqe_R7e-22275174Myocyte-specific enhancer factor 2B
1tqe_S7e-22275174Myocyte-specific enhancer factor 2B
6c9l_A7e-22275174Myocyte-specific enhancer factor 2B
6c9l_B7e-22275174Myocyte-specific enhancer factor 2B
6c9l_C7e-22275174Myocyte-specific enhancer factor 2B
6c9l_D7e-22275174Myocyte-specific enhancer factor 2B
6c9l_E7e-22275174Myocyte-specific enhancer factor 2B
6c9l_F7e-22275174Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.114730.0flower| silique
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8566161e-173KF856616.1 UNVERIFIED: Brassica oleracea var. viridis MADS box protein-like (AGL11) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113584.11e-162PREDICTED: agamous-like MADS-box protein AGL11 isoform X3
SwissprotQ388361e-129AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A3P5Y0I31e-156A0A3P5Y0I3_BRACM; Uncharacterized protein
TrEMBLM4F9Y11e-156M4F9Y1_BRARP; Uncharacterized protein
STRINGBra037895.1-P1e-157(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-132MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]