PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113582.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26269.8 Da    PI: 9.7536
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.7e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_009113582.1  9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
                    79***********************************************8 PP
2K-box103.92.1e-34741722100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     +++s+ s++e +a+++qqe+akL+++i+++q+++Rhl+G++L+ Ls+keL+q+e++Lek++++iRskK+elll++ie+lqk+e el++e  +Lr+
  XP_009113582.1  74 DNTSTHSVQEINAAYYQQESAKLRQQIQTIQNSNRHLMGDSLSALSVKELKQVENRLEKAISRIRSKKHELLLAEIENLQKREIELDNESIYLRT 168
                     56777889*************************************************************************************** PP

           K-box  97 klee 100
                     k++e
  XP_009113582.1 169 KIAE 172
                     *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.034161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-33288IPR002100Transcription factor, MADS-box
CDDcd002654.28E-43275No hitNo description
PRINTSPR004045.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2585170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.38386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN  60
NIRSTIERYK KASDNTSTHS VQEINAAYYQ QESAKLRQQI QTIQNSNRHL MGDSLSALSV  120
KELKQVENRL EKAISRIRSK KHELLLAEIE NLQKREIELD NESIYLRTKI AEVERFQQHH  180
HQMVSGTEMT AIEVLASRNY FAHSIMTTGS GSGAGHGCSY SDPDKKIHLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-22174174Myocyte-specific enhancer factor 2B
1tqe_Q9e-22174174Myocyte-specific enhancer factor 2B
1tqe_R9e-22174174Myocyte-specific enhancer factor 2B
1tqe_S9e-22174174Myocyte-specific enhancer factor 2B
6c9l_A9e-22174174Myocyte-specific enhancer factor 2B
6c9l_B9e-22174174Myocyte-specific enhancer factor 2B
6c9l_C9e-22174174Myocyte-specific enhancer factor 2B
6c9l_D9e-22174174Myocyte-specific enhancer factor 2B
6c9l_E9e-22174174Myocyte-specific enhancer factor 2B
6c9l_F9e-22174174Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.114730.0flower| silique
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8566160.0KF856616.1 UNVERIFIED: Brassica oleracea var. viridis MADS box protein-like (AGL11) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113582.11e-169PREDICTED: agamous-like MADS-box protein AGL11 isoform X2
RefseqXP_009113583.11e-169PREDICTED: agamous-like MADS-box protein AGL11 isoform X2
SwissprotQ388361e-140AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A3P5Y0I31e-168A0A3P5Y0I3_BRACM; Uncharacterized protein
TrEMBLM4F9Y11e-168M4F9Y1_BRARP; Uncharacterized protein
STRINGBra037895.1-P1e-169(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-143MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]