PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113413.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 296aa    MW: 33319.6 Da    PI: 6.0364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-14105156155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+++  A+++I++L+
  XP_009113413.1 105 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRCDQASTVGGAINFIRELE 156
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-12103160No hitNo description
SuperFamilySSF474591.57E-15104168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.637104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-13104160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALEGAISQC SYNGKEAYSN IYTDNEPPFS DLQAALCFLD NQTDNYDSTF LQEGYYGNTT  60
TFLHQPPNEE KPAANCDISF HGDMGKNQVT RRTRAKKNKE EISNQRMTHI AVERNRRRQM  120
NEYLSVLRSL MPESYVQRCD QASTVGGAIN FIRELEHRLH LQNLCCETNE TSLSGSCMSS  180
ATPFSDTFKL PQFSMGSSSV SDNMVLEVNA LADIEVSLVE SHATLKIRSR RRPKVLLNMV  240
SGLQNLGFII LHLNVSTVSD FVLYCFSTKM EDCCKLSSVA DIATAVYEML KMHHDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105116RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113413.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113413.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T48e-64BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078HWF90.0A0A078HWF9_BRANA; BnaA09g15620D protein
TrEMBLA0A397XUL60.0A0A397XUL6_BRACM; Uncharacterized protein
STRINGBra027958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]