PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113250.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 236aa    MW: 26941.5 Da    PI: 10.1157
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-11853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede l+ a  ++G+++W +I++    ++++kqck rw+ +l
   XP_009113250.1  8 GVWKNTEDEVLKAAMMKYGKNQWGRISSLSV-RKSAKQCKARWNEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding35.22.9e-1160103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k l++  W+tIa  +g  Rt+ qc +r+ k+l
   XP_009113250.1  60 TEWTREEDEKLLHLSKILPTQ-WRTIAPAVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.217253IPR017930Myb domain
SMARTSM007173.1E-11655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-17961IPR009057Homeodomain-like
PfamPF139213.9E-121070No hitNo description
CDDcd001679.11E-91053No hitNo description
SuperFamilySSF466892.42E-2033104IPR009057Homeodomain-like
PROSITE profilePS5129420.33854107IPR017930Myb domain
CDDcd116591.29E-3055104No hitNo description
SMARTSM007172.0E-1258105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1462104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRSMVKGGVW KNTEDEVLKA AMMKYGKNQW GRISSLSVRK SAKQCKARWN EWLDPSIKKT  60
EWTREEDEKL LHLSKILPTQ WRTIAPAVGR TPSQCLERYE KLLDASSCSK GYEAGGDPRK  120
LRPGEIDPNP ESKPARPDQV DMEDDEMEML SEARARLANT RGKKAKRKAR EKQIQEARSL  180
GSLQKRRELI AAGIDDGKRR NRKGKGIDYS AEIAFEKRAP AGFYDTADED RHADNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-10722333234Cell division cycle 5-like protein
5xjc_L1e-10722333234Cell division cycle 5-like protein
5yzg_L1e-10722333234Cell division cycle 5-like protein
5z56_L1e-10722333234Cell division cycle 5-like protein
5z57_L1e-10722333234Cell division cycle 5-like protein
5z58_L1e-10722333234Cell division cycle 5-like protein
6ff4_L1e-10722333234Cell division cycle 5-like protein
6ff7_L1e-10722333234Cell division cycle 5-like protein
6icz_L1e-10722333234Cell division cycle 5-like protein
6id0_L1e-10722333234Cell division cycle 5-like protein
6id1_L1e-10722333234Cell division cycle 5-like protein
6qdv_O1e-10722333234Cell division cycle 5-like protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113250.11e-174PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-128CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A397XW641e-172A0A397XW64_BRACM; Uncharacterized protein
TrEMBLM4EEE81e-172M4EEE8_BRARP; Uncharacterized protein
STRINGBra027160.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16532913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-124cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]