PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113119.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 380aa    MW: 42108.8 Da    PI: 4.8782
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.12.7e-38155243297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +fqrlw+eeDei++LqG+idfk++tgksp+dd++  y+++kksisf+vsk+q+++Kir+L+kK+ +k+k        sf+k+hdqk++ l++ iW
  XP_009113119.1 155 AFQRLWTEEDEIAVLQGMIDFKNDTGKSPYDDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRLCQYIW 242
                     69***************************************************************99876.......****************** PP

          DUF573  97 g 97 
                     g
  XP_009113119.1 243 G 243
                     9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-30156243IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSKKRNPLED PPAASSSDEE EVESSAEEEE EEDDNSSSEE EDDDPKPPPP SSSAVTIAVP  60
GKPTASLPAA DSESGSETET DSESEPEQPT NKGSGKAILT AKKSNDAPPP PPVALALPAK  120
SGSKRPSTEG SSKETNSKRV KKDEEKREDS KKPAAFQRLW TEEDEIAVLQ GMIDFKNDTG  180
KSPYDDTNVY YDYIKKSISF EVSKNQFMDK IRSLRKKYIG KEKPSFTKPH DQKSYRLCQY  240
IWGPDGMGLE SAVKSNGASK KSQKKTKKLD SVKQELSFGA SPNGKTVDDD ENDVEVAVAA  300
KKHDWFENSF LVKGIAGFGV DEHYVKQRWS LVPVETKKKV EEKLKLLQAK EIEFVLQKTE  360
VLHEVTTMIA EAYKNKPLDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113119.10.0PREDICTED: probable transcription factor At1g61730
SwissprotQ9SYA91e-130STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLM4EE670.0M4EE67_BRARP; Uncharacterized protein
STRINGBra027078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-82DNA-binding storekeeper protein-related transcriptional regulator