PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113084.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 382aa    MW: 43010.3 Da    PI: 6.5877
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093083422155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+++q+ +WF N+R ++
  XP_009113084.1 308 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 342
                     569*****************************885 PP

2ELK413.9e-14262283122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyLgsLkqEF+
  XP_009113084.1 262 ELKGQLLRKYSGYLGSLKQEFM 283
                     9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-17119163IPR005540KNOX1
PfamPF037903.4E-20121159IPR005540KNOX1
SMARTSM012567.0E-26170221IPR005541KNOX2
PfamPF037911.8E-20174219IPR005541KNOX2
SMARTSM011882.8E-8262283IPR005539ELK domain
PROSITE profilePS5121311.174262282IPR005539ELK domain
PfamPF037896.4E-11262283IPR005539ELK domain
PROSITE profilePS5007113.151282345IPR001356Homeobox domain
SMARTSM003895.3E-13284349IPR001356Homeobox domain
SuperFamilySSF466891.45E-19284360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28287347IPR009057Homeodomain-like
CDDcd000861.45E-12294346No hitNo description
PfamPF059203.4E-17302341IPR008422Homeobox KN domain
PROSITE patternPS000270320343IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPVITSHQQH HGHDQQHQHQ QQHDGYAYQS  60
HHQQSSSLFL QSLTPPSQEA KNKVTSSCSP SSGAPAYSFM EINHQNELLA GGLNPCSSAS  120
VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL  180
DQFMEAYCEM LVKYEQELSK PFKEAMVFLQ HVECQFKSLS LSSPSSFSGY GEAAIERNNN  240
GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL  300
DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH  360
HYFMDNVMGN PFPIDHISST ML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277286LKQEFMKKRK
2283287KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.319310.0bud
Functional Description ? help Back to Top
Source Description
UniProtRequired for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4805850.0GU480585.1 Brassica rapa SHOOT MERISTEMLESS (STM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288949.10.0homeobox protein SHOOT MERISTEMLESS
SwissprotQ9M6D90.0STM_BRAOL; Homeobox protein SHOOT MERISTEMLESS
TrEMBLA0A397XTU00.0A0A397XTU0_BRACM; Uncharacterized protein
TrEMBLM4EE390.0M4EE39_BRARP; Uncharacterized protein
STRINGBra027050.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.10.0KNOX/ELK homeobox transcription factor