PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009113084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 382aa MW: 43010.3 Da PI: 6.5877 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 308 | 342 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_009113084.1 308 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 342 569*****************************885 PP | |||||||
2 | ELK | 41 | 3.9e-14 | 262 | 283 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_009113084.1 262 ELKGQLLRKYSGYLGSLKQEFM 283 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-17 | 119 | 163 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.4E-20 | 121 | 159 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.0E-26 | 170 | 221 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.8E-20 | 174 | 219 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 262 | 283 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 262 | 282 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.4E-11 | 262 | 283 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.151 | 282 | 345 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-13 | 284 | 349 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-19 | 284 | 360 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 287 | 347 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.45E-12 | 294 | 346 | No hit | No description |
Pfam | PF05920 | 3.4E-17 | 302 | 341 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 320 | 343 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPVITSHQQH HGHDQQHQHQ QQHDGYAYQS 60 HHQQSSSLFL QSLTPPSQEA KNKVTSSCSP SSGAPAYSFM EINHQNELLA GGLNPCSSAS 120 VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL 180 DQFMEAYCEM LVKYEQELSK PFKEAMVFLQ HVECQFKSLS LSSPSSFSGY GEAAIERNNN 240 GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL 300 DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH 360 HYFMDNVMGN PFPIDHISST ML |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 286 | LKQEFMKKRK |
2 | 283 | 287 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31931 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009113084.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU480585 | 0.0 | GU480585.1 Brassica rapa SHOOT MERISTEMLESS (STM) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288949.1 | 0.0 | homeobox protein SHOOT MERISTEMLESS | ||||
Swissprot | Q9M6D9 | 0.0 | STM_BRAOL; Homeobox protein SHOOT MERISTEMLESS | ||||
TrEMBL | A0A397XTU0 | 0.0 | A0A397XTU0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EE39 | 0.0 | M4EE39_BRARP; Uncharacterized protein | ||||
STRING | Bra027050.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6473 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 0.0 | KNOX/ELK homeobox transcription factor |