PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113030.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 295aa    MW: 33308.6 Da    PI: 6.3437
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.52e-072452772254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_009113030.1 245 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 277
                     48*****************************87 PP
2ELK26.31.7e-09198219122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_009113030.1 198 ELKIELKQGFKSRIEDVREEIM 219
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-153074IPR005540KNOX1
PfamPF037901.4E-143272IPR005540KNOX1
SMARTSM012561.1E-2484139IPR005541KNOX2
PfamPF037916.9E-1988138IPR005541KNOX2
SMARTSM011880.0086198219IPR005539ELK domain
PROSITE profilePS512139.132198218IPR005539ELK domain
PROSITE profilePS5007111.791218281IPR001356Homeobox domain
SuperFamilySSF466894.28E-16220284IPR009057Homeodomain-like
SMARTSM003891.6E-10220285IPR001356Homeobox domain
CDDcd000864.04E-12221282No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24225282IPR009057Homeodomain-like
PfamPF059203.3E-18238277IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNMEEAALGM IGATVGGGDG DAVLVAEQNR QMKGEIASHT MCEQLLAAHV ACLRVATPID  60
QLPIIEAQLS HSEHLLRSYA STPVGFSHHD RHELDNFLAQ YVMILCSFKE QLQQHVRVHA  120
VEAVMACREI ENNLHSLTGV TLGEGSGATM SEDEDDLQMD FSSDNSGVDF NGGHDTTGFG  180
PLLPTESERS LMERVRQELK IELKQGFKSR IEDVREEIMR KRRAGKLPGD TTTLLKNWWQ  240
QHCKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSHSLTSLK SKRKH
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113030.10.0PREDICTED: homeobox protein HD1-like isoform X1
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLM4EDZ60.0M4EDZ6_BRARP; Uncharacterized protein
STRINGBra027006.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]