PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009112883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 33933.1 Da PI: 8.8359 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 113 | 163 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg++ tae Aa a+++a+ kl+ge XP_009112883.1 113 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 163 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.52E-16 | 112 | 172 | No hit | No description |
SuperFamily | SSF54171 | 3.07E-22 | 113 | 170 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-36 | 113 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-31 | 113 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 113 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 114 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MEENNDVFQT KFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSSRESS TTSLDTLNPP 60 PQQLGSSVYL QQRDLIERLH LQNRAVSTPP PLFSSSAAFA ASLAAGTAKR KKLYRGVRQR 120 HWGKWVAEIR LPQNRMRVWL GTYETAEAAA YAYDRAAYKL RGEYARLNFP NLKDPSELLG 180 LGDSSKLIAL KSAVDGKIQT ICQRVRRERA KKSGKGSKDS STATADSSYS SSSEILSSPA 240 EAVTATVVSS EDSYRSSQMG LWNSEKSYPA TTTSTAEEED TMMGVDTDGF LLARMPSFDP 300 ELIWEVLAN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 112 | 170 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 112 | 170 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009112883.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC066689 | 1e-119 | AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence. | |||
GenBank | AK228763 | 1e-119 | AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15. | |||
GenBank | AY560876 | 1e-119 | AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds. | |||
GenBank | BT033082 | 1e-119 | BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-119 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009112883.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 1e-143 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | M4EFY4 | 0.0 | M4EFY4_BRARP; Uncharacterized protein | ||||
STRING | Bra027697.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4174 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64380.1 | 1e-120 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|