PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112847.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 338aa MW: 36292.1 Da PI: 8.3674

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	40	100	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+s ntkfCyynnysl+qPryfCk C+ryWt+GG+lrn+P+Ggg rknk+ s XP_009112847.1 40 KDHALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCKRYWTQGGSLRNIPIGGGLRKNKRPS 100 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	41	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.472	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDTAKWPQEF IVKPMNETCL KQPNPAAAAP VEEKKARPEK DHALNCPRCN SLNTKFCYYN 60 NYSLTQPRYF CKDCKRYWTQ GGSLRNIPIG GGLRKNKRPS SSSSSSSNSN SSSSSKKTLS 120 VNNKTPPPPV QQLNLTSVEN DHEAKAYSHG FGNAHEAKDL SSAFSQGFGI GHHHQSIPEF 180 LQVVPSSMKS HALVSTSSAL ELLGISNSST TSSNSRPAFV TYPNVHDSSV YAAASPGFGM 240 SFPQFQEFMR PPLGFPLDGG DPLRQQEGSS GTDIGRPLLP FESLKLPVSS SSTNSGGGGN 300 GNDHKREKEE GEADNSVGFW NGMLSAGDSA ASAGGPWQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00210	DAP	Transfer from AT1G64620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112847.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112847.1	0.0	PREDICTED: dof zinc finger protein DOF1.8
Swissprot	Q84JQ8	1e-140	DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBL	A0A3P5XXL2	0.0	A0A3P5XXL2_BRACM; Uncharacterized protein
STRING	Bra027722.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14932	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	1e-118	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340]