PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 305aa    MW: 33176.2 Da    PI: 9.4271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16119169256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+W+A Ir p +   r r++lg++ tae Aa a+++a+ kl+ge
  XP_009112830.1 119 LYRGVRQRH-WGKWAAGIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 169
                     59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.46E-14118177No hitNo description
SuperFamilySSF541712.75E-21119176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-29119177IPR001471AP2/ERF domain
SMARTSM003804.7E-33119182IPR001471AP2/ERF domain
PROSITE profilePS5103222.603119176IPR001471AP2/ERF domain
PfamPF008474.5E-11120169IPR001471AP2/ERF domain
PRINTSPR003675.0E-10120131IPR001471AP2/ERF domain
PRINTSPR003675.0E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEHNYHFQT NLSPKISEIR ASLSQIILAG GPNTLDSVFS FLATSSATTS LDTLNPPPPQ  60
LGSSVYLHQR DLIESFHLQN RAISTPPPLF SSSFDHQSSP AAAFAAALAA GRTAKKKKLY  120
RGVRQRHWGK WAAGIRLPQN RMRVWLGTYE TAEAAAYAYD RAAYKLRGEY ARLNFPNIKD  180
PSELLGLGDS SKLTALKNAV DGKIQSICQR VRRERAKKSG KGSKDSSSSS PGSLSSPAAT  240
ATAADSENSY WNSKNSSPAS VSISDEMPAT TTAAAEEDMM MDTEGFLLAR MPSFDPELIW  300
EVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19116176263ATERF1
3gcc_A3e-19116176263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666891e-128AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287631e-128AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608761e-128AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330821e-128BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026841e-128CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112830.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-130ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM4EG230.0M4EG23_BRARP; Uncharacterized protein
STRINGBra027736.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-98ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]