PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009112503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 248aa MW: 28131 Da PI: 5.3192 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1e-15 | 17 | 93 | 11 | 95 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++ +++p +f+++h + k+++k+ +l++ s ++Wev ++++ lt+GWk+F a++L+ gD++vFk++g++ f +v+ XP_009112503.1 17 F-HNGVTIPLSFFSQHiQ-GKTNGKKWKLRSdASDQTWEVIQ--EGRR----LTGGWKDFTTAHDLRIGDILVFKHEGDMVF--HVT 93 3.5569**********64.4567889999987899*****99..8887....***********************9999988..766 PP | |||||||
2 | B3 | 56.8 | 3.9e-18 | 130 | 223 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++++ +++ l+l + ++ ++k + k+++l +++g+sW+ l+y+ +++++++kGW+eF+++n gD +vF ++g+ ++++++ v+ XP_009112503.1 130 AEVTASNINEDKLYLLVEATTCTALNK-QLKEIILVNKEGNSWTASLRYSEADDMFYIRKGWREFCEENICTIGDLFVFNVVGDGNTTPLMCVCP 223 567888888999999999884447776.668*****************************************************99999999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.47E-20 | 3 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-21 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.012 | 6 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.85E-15 | 7 | 95 | No hit | No description |
SMART | SM01019 | 9.6E-20 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-10 | 18 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-15 | 127 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-14 | 127 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.9E-15 | 128 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.294 | 128 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-17 | 130 | 223 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.67E-9 | 154 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGNPQEPHFL KPLLPGFHNG VTIPLSFFSQ HIQGKTNGKK WKLRSDASDQ TWEVIQEGRR 60 LTGGWKDFTT AHDLRIGDIL VFKHEGDMVF HVTPFGPSCC EIQFTHPHSI KEEADVDDTH 120 SFSFDYCFLA EVTASNINED KLYLLVEATT CTALNKQLKE IILVNKEGNS WTASLRYSEA 180 DDMFYIRKGW REFCEENICT IGDLFVFNVV GDGNTTPLMC VCPERKECSE LLIKHLSIMN 240 GDLLLAHG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009112503.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232550 | 0.0 | AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013709561.1 | 1e-174 | B3 domain-containing protein REM8-like | ||||
TrEMBL | M4F820 | 0.0 | M4F820_BRARP; Uncharacterized protein | ||||
STRING | Bra037231.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 7e-62 | B3 family protein |