PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009112382.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 155aa MW: 18315.4 Da PI: 10.5646 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.3 | 8.5e-25 | 30 | 78 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + s ed++ yF++pi++AAkeLgv+lT+LKr+CR++G +RWPhRk++s+ XP_009112382.1 30 KFSREDMKPYFKMPITKAAKELGVGLTLLKRRCRELGFSRWPHRKLTSI 78 67899*****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.428 | 14 | 98 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.5E-21 | 32 | 78 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MEIILHDGNN TTKETTMQKR RYRGDRLIQK FSREDMKPYF KMPITKAAKE LGVGLTLLKR 60 RCRELGFSRW PHRKLTSIDG LINNLKDHLG KMEGEVNRSK LMNALEILEA EKKMIEEFPD 120 LEFEDKTKRL RQACFKANYK RRRLLCSMST TSFVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 143 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009112382.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009112382.1 | 1e-112 | PREDICTED: protein RKD3 | ||||
Refseq | XP_022548100.1 | 1e-111 | protein RKD3-like | ||||
Swissprot | Q9FGD1 | 3e-65 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A078G1X7 | 1e-110 | A0A078G1X7_BRANA; BnaA09g07620D protein | ||||
STRING | Bra037130.1-P | 1e-103 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-67 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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