PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112207.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 294aa    MW: 32435 Da    PI: 10.607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
   XP_009112207.1  5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDPHfssvlKSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.388161IPR017930Myb domain
SuperFamilySSF466896.95E-16259IPR009057Homeodomain-like
SMARTSM007171.1E-6459IPR001005SANT/Myb domain
PfamPF002491.2E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-14556IPR009057Homeodomain-like
CDDcd116602.19E-18656No hitNo description
SuperFamilySSF467855.99E-16114194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.2E-14115180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.6E-13115182IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.56117185IPR005818Linker histone H1/H5, domain H15
PfamPF005387.3E-10121178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILSDPHFSSV LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL ALKRALPPPP PKHDADNNTR ALSIVPLANG EEQTNLTSPR THASKKSITS  120
LDRIILEAIT NLKEPRGSDR TSIFMYIEDN FKTPPNMKRH VAVRLKHLSS NGPLVKIKHK  180
YRFSTNFTSA GARHKSSQLC IEEGNNNSPR PKGNGANILT KSRADEEVFM IKGMTAKEAA  240
ETAARAVAEA EFAITEAEEA AKEADKAEAE AEAAQIYAKA AVKALKFRIS NHTW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.81260.0bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895260.0AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112207.10.0PREDICTED: telomere repeat-binding factor 2-like
RefseqXP_009112208.10.0PREDICTED: telomere repeat-binding factor 2-like
SwissprotQ9FJW51e-128TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A397Y1Y80.0A0A397Y1Y8_BRACM; Uncharacterized protein
TrEMBLM4F9S60.0M4F9S6_BRARP; Uncharacterized protein
STRINGBra037839.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-107MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]