PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112199.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 362aa    MW: 40754.5 Da    PI: 5.6718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++  G+g +W + ++++g++R++k+c++rw++yl
   XP_009112199.1 14 KGPWSPEEDAKLKDYIENSGTGgNWIALPQKIGLRRCGKSCRLRWLTYL 62
                     79*********************************************97 PP
2Myb_DNA-binding34.74e-1171111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++eEd ++ ++    G++ W+ Ia+ +  gRt++++k++w++
   XP_009112199.1  71 FSEEEDNIICNLYVTIGSR-WSIIAAQLS-GRTDNDIKNYWNT 111
                      89*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.277962IPR017930Myb domain
SuperFamilySSF466891.19E-2411109IPR009057Homeodomain-like
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002491.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-221569IPR009057Homeodomain-like
CDDcd001672.18E-71662No hitNo description
PROSITE profilePS5129419.6163117IPR017930Myb domain
SMARTSM007179.6E-1067115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2170117IPR009057Homeodomain-like
CDDcd001674.69E-771113No hitNo description
PfamPF002491.7E-971111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLT  60
YLRPNIKHVG FSEEEDNIIC NLYVTIGSRW SIIAAQLSGR TDNDIKNYWN TRLKKKLLNK  120
QRKEFQEARM KQEMVMMKRQ QEGHDHINGS TDLYLKNMFG SSPWPLLQQL PHHQVPLVMM  180
EPTSCNYYQT SPSCNLEQKP LITFKNMVKI EEEPERTNPY NPQHQNSITN PFDVSFSQLL  240
LDPNYYLGSG GGAEGDFAIM SSSTNSPLPN TSGDQNEHQQ QEILQWFGSS NLQTEASSDM  300
FLNNIGNLET NEDTRFYSSL AGVGAALAGG TTSTSADQST ISWEDITSLV NSEDASYFNG  360
PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892660.0AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112199.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y91e-121RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A3P5XVI20.0A0A3P5XVI2_BRACM; Uncharacterized protein
STRINGBo9g018910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-179myb domain protein 68
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]