PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112191.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 284aa MW: 31748.2 Da PI: 9.0569

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.3e-38	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ tkfCyynny+lsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks XP_009112191.1 33 DQQTLKCPRCNSSTTKFCYYNNYNLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 92 57899***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	32	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MSSHTNLHSP KPDHGISGTS HTKKPPSSSS SQDQQTLKCP RCNSSTTKFC YYNNYNLSQP 60 RHFCKSCRRY WTRGGALRNV PIGGGCRKTK KSFKPNTSTP SSCQRFYSSV MEDSSKFFPP 120 PTTMGFQLMN NQVLGLRPME QAKTTPVDVR SGLSLMGFGD YSNHSPATFS TAGTLATSIE 180 TLSCLNQDLH WKLQQQRMAM LFGNSNEETV VVERPQPILY RNLEIVNSPP TKKGENQTEW 240 YFGNNNDNEG VVSNNDNNNN TGGSDQWNNG IQAWTDLNHY NALP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112191.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189266	0.0	AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112191.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	1e-152	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	M4F9Q9	0.0	M4F9Q9_BRARP; Uncharacterized protein
STRING	Bra037822.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-131	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]