PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112160.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 200aa    MW: 22714.1 Da    PI: 6.394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.5e-27107165159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy+WrKYG+K+vk++ + r+YY+C+s+gC+vkk++er+ +d  +v++tYeg Hnhe
  XP_009112160.1 107 MDDGYKWRKYGKKSVKNNINKRNYYKCSSEGCMVKKRIERDGKDAAYVITTYEGVHNHE 165
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-3094167IPR003657WRKY domain
SuperFamilySSF1182904.45E-2699167IPR003657WRKY domain
PROSITE profilePS5081129.046102167IPR003657WRKY domain
SMARTSM007743.0E-30107166IPR003657WRKY domain
PfamPF031061.7E-21108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNFPQNPNPN FTFLSDENFI SPFMDNFDFT NLMFEVDEGG NNGLVQEENS PPTSIVSSET  60
LTCDSSGSGS AVMTLSKKDS TGIKDAETKE PPSHRVAFRT RSKMDVMDDG YKWRKYGKKS  120
VKNNINKRNY YKCSSEGCMV KKRIERDGKD AAYVITTYEG VHNHEIPSHV YYSDMVSSYD  180
HNNWNQHSLL QSIQHISPPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2497168778Probable WRKY transcription factor 4
2lex_A8e-2497168778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.288290.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112160.11e-150PREDICTED: probable WRKY transcription factor 51 isoform X2
SwissprotQ93WU91e-105WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A3P5Y8U11e-146A0A3P5Y8U1_BRACM; Uncharacterized protein
STRINGBo9g018440.11e-127(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-98WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]