PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 267aa    MW: 28646.4 Da    PI: 7.553
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1214.1e-3846106262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++++lkcprC+s ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  XP_009111960.1  46 HHQSLKCPRCNSLNTKFCYYNNYNHSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 106
                     57899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-323799IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3248104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.19950104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQDIHDYSMT GGGGGGGGGG RTGRFFGGGG GGDRRMRVHQ NNILNHHQSL KCPRCNSLNT  60
KFCYYNNYNH SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KAKRSKSKQP PSSSSTSTAD  120
KPMAQDGEEK PCSSESSSLP AGAATAAAAK GVMGADMHNI KLYGNGIEWS TLLGQGSSDG  180
GVFEMGGFTA LSIDTTPFGF GGNTVQQQFE DRTAQVDPTM EFEPLDWGSG GGDQTLFDLT  240
STADHAYWSH QDQNDLTFHN SDSFSSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531381e-104AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111960.10.0PREDICTED: dof zinc finger protein DOF5.4-like
SwissprotQ8LDR01e-104DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBLA0A078FV410.0A0A078FV41_BRANA; BnaA09g05460D protein
TrEMBLA0A397XRG50.0A0A397XRG5_BRACM; Uncharacterized protein
TrEMBLM4F4F60.0M4F4F6_BRARP; Uncharacterized protein
STRINGBra035956.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.16e-92OBF binding protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu P,Chen H,Ying L,Cai W
    AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 27705
    [PMID:27297966]
  3. Ramirez-Parra E, et al.
    The transcription factor OBP4 controls root growth and promotes callus formation.
    New Phytol., 2017. 213(4): p. 1787-1801
    [PMID:27859363]
  4. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]