PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009111960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 267aa MW: 28646.4 Da PI: 7.553 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121 | 4.1e-38 | 46 | 106 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ XP_009111960.1 46 HHQSLKCPRCNSLNTKFCYYNNYNHSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 106 57899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-32 | 37 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-32 | 48 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.199 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MQDIHDYSMT GGGGGGGGGG RTGRFFGGGG GGDRRMRVHQ NNILNHHQSL KCPRCNSLNT 60 KFCYYNNYNH SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KAKRSKSKQP PSSSSTSTAD 120 KPMAQDGEEK PCSSESSSLP AGAATAAAAK GVMGADMHNI KLYGNGIEWS TLLGQGSSDG 180 GVFEMGGFTA LSIDTTPFGF GGNTVQQQFE DRTAQVDPTM EFEPLDWGSG GGDQTLFDLT 240 STADHAYWSH QDQNDLTFHN SDSFSSF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009111960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353138 | 1e-104 | AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111960.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Swissprot | Q8LDR0 | 1e-104 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A078FV41 | 0.0 | A0A078FV41_BRANA; BnaA09g05460D protein | ||||
TrEMBL | A0A397XRG5 | 0.0 | A0A397XRG5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F4F6 | 0.0 | M4F4F6_BRARP; Uncharacterized protein | ||||
STRING | Bra035956.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 6e-92 | OBF binding protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|