PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009111803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 31010.2 Da PI: 8.2941 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v G g+W+t+a+ g++R+ k+c++rw +yl XP_009111803.1 29 KGPWTPEEDKLLGEYVSSNGEGRWSTVAKSAGLNRSSKSCRLRWVNYL 76 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.7e-16 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ XP_009111803.1 82 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 126 7888******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.658 | 24 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-31 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-10 | 31 | 76 | No hit | No description |
SMART | SM00717 | 1.8E-13 | 81 | 129 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.952 | 81 | 131 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.6E-14 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 84 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.09E-9 | 86 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MLYWGVDQVH HPNHDQDPYK QQQQQGCRKG PWTPEEDKLL GEYVSSNGEG RWSTVAKSAG 60 LNRSSKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK 120 NYWRTHYKKK EKSFSKQEKL RRSRKQFDLK PQPQLQNQQS KLVSEDHINL DNKQNIATYF 180 SYPTSVYNDK FHMPQNVAAT SSDHSMIDEG NFWCSLWSLE DDDPHGGSEQ RTTTSIAEKF 240 NGGGNEAPSC GSWDYSYNEF YNGGYIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 29 | 130 | 7 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009111803.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111803.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | Q10MB4 | 3e-48 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A078G5L3 | 0.0 | A0A078G5L3_BRANA; BnaA09g02730D protein | ||||
TrEMBL | A0A397XVN8 | 0.0 | A0A397XVN8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F546 | 0.0 | M4F546_BRARP; Uncharacterized protein | ||||
STRING | Bra036202.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-132 | myb domain protein 121 |
Publications ? help Back to Top | |||
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