PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111739.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 401aa    MW: 42610.8 Da    PI: 4.1564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014189211123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k F+++  L  H++ H
  XP_009111739.1 189 FSCPTCKKGFPSSQALGGHQNAH 211
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.93E-6186217No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4187216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572189216IPR007087Zinc finger, C2H2
PfamPF139128.6E-7189213IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSSSSSSVFQ PKTCNEIIVA VEESMEKAAE SQVVSSASSS ATQPEKCNDL TVAVEESMEK  60
ATENQAVSSD GSSAAPQPEK TNDVTMAVEE AKEMAAENQV VSSAGSSAAP QPNDIIVAVE  120
GDKEVATENQ IVPYTGSPAP QAEQCTDIVI VATENNNPGT ENPSLMGSGA VPTGSQILQL  180
YPPRSNKIFS CPTCKKGFPS SQALGGHQNA HKQEREWEKK RKNMEQEYPG FAFLNPNIDN  240
PLMFFLGGYS EDALTHENHL GIPLDDAFKR RFARNHPSVN NGSSDMNITA VPRVAPTGFF  300
AGNTPTTNGS SSGGLGPPYN SYPPMLPRNF PPFPPPQTNN LPSGLYPQQE NVLNEVNFIS  360
EIGKGKNIIE IDDDDDDDAD AGADDGPIAG TSKSWGADLS L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111739.10.0PREDICTED: uncharacterized protein LOC103837161
TrEMBLM4F6A00.0M4F6A0_BRARP; Uncharacterized protein
STRINGBra036609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-62C2H2 family protein