PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111717.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 147aa    MW: 16594.4 Da    PI: 8.595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-075980526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    lC++f  + +C++Gd+C++ H+
  XP_009111717.1 59 LCNRFVSSNFCPFGDSCRYLHP 80
                    8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-12451No hitNo description
PfamPF062206.4E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.4325482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65681IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-65980IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-65979IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSNP HLRAKALWYS SITSDVNNQQ VSSFVPRGLC  60
NRFVSSNFCP FGDSCRYLHP NNITGFTNNN NNTQPPTGLP NQHIQGSSLN RDCFSRRAGG  120
AGWFDLPPSL RPPPEQGYPQ PPSIDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111717.11e-107PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A078G4X22e-92A0A078G4X2_BRANA; BnaA09g04110D protein
STRINGBra036592.1-P6e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-60C3H family protein