PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111648.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 403aa    MW: 44246.9 Da    PI: 5.9795
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.1e-076294436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  + l+C+ +  +lC +C ++ H  
  XP_009111648.1 62 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 94
                    58***************************9954 PP
2zf-B_box27.27.8e-09104149342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_009111648.1 104 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 149
                     689*****************************66899999999986 PP
3CCT69.87.1e-24336379144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  XP_009111648.1 336 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 379
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.43859106IPR000315B-box-type zinc finger
SMARTSM003364.2E-1359106IPR000315B-box-type zinc finger
PfamPF006433.7E-562101IPR000315B-box-type zinc finger
CDDcd000212.78E-863106No hitNo description
PROSITE profilePS5011910.893102149IPR000315B-box-type zinc finger
PfamPF006434.0E-7104149IPR000315B-box-type zinc finger
CDDcd000213.29E-9105149No hitNo description
SMARTSM003361.3E-10107149IPR000315B-box-type zinc finger
PfamPF062038.2E-18336378IPR010402CCT domain
PROSITE profilePS5101716.767336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MITNTSFCAL SELPCQILME PTWIDSWTSS CEXHSNTNHX RESNKYRERS IEREEKREMA  60
SKLCDSCKSA TAALYCRPDA AFLCLSCDSK VHAANKLASR HARVWMCEVC EQAPAHVTCK  120
ADAAALCVTC DRDIHSANPL ARRHERVPVT PFYDSVSGTD GSGKHTAVNF LNDCYFTDLD  180
GNVSREEEEE EAASWLLPNP KTTAPAVPGD SPEMNTGQGF MFPDLDLDYG TVDPKLESQE  240
PNSSGTDGVV PVETRRVGVP TVNENCYDLD FTGGSKGVIT YGHNCISHSV SSSSLEVGVV  300
PDGGSVADVS YPFGGPATSG TDPVTQRAVP LTSAEREARV MRYREKRKNR KFEKTIRYAS  360
RKAYAEMRPR IKGRFAKRTD TNESNDVVGH GGMFSGFGLV PTF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.18160.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9497910.0KU949791.1 Raphanus sativus var. raphanistroides isolate Rs-7 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510673.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLM4F6190.0M4F619_BRARP; Uncharacterized protein
STRINGBra036528.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4