PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111538.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 178aa    MW: 19990.5 Da    PI: 10.3303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98e-2154103355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ykGVr+++ +g+++AeIrdps+ng  +r +lg++ t+eeAa a+++a+ k++g
  XP_009111538.1  54 YKGVRRRP-WGKYAAEIRDPSKNG--ARMWLGTYETPEEAAVAYDQAAFKMRG 103
                     9*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3853117IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2453112IPR016177DNA-binding domain
PROSITE profilePS5103223.9253111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3253112IPR001471AP2/ERF domain
PRINTSPR003673.0E-135465IPR001471AP2/ERF domain
CDDcd000181.36E-2954113No hitNo description
PfamPF008472.5E-1454103IPR001471AP2/ERF domain
PRINTSPR003673.0E-1393113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEGELSWDNG SAVLDWIRRQ LLEEDDIDMT ASRSLATDSS SSSSSAPPRR GATYKGVRRR  60
PWGKYAAEIR DPSKNGARMW LGTYETPEEA AVAYDQAAFK MRGSKAKLNF PHLISSAHEA  120
QAVKVSNCCN KRQRPQESNS PVVPKRRNNI NIINQTARLP SLGLKSVFKN TYNDFMRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3050117269ATERF1
3gcc_A4e-3050117269ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.290690.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111538.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111538.11e-131PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013694248.11e-131ethylene-responsive transcription factor 13-like
TrEMBLA0A397XXB51e-129A0A397XXB5_BRACM; Uncharacterized protein
STRINGBo9g001020.17e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-38ethylene-responsive element binding factor 13