PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111444.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 310aa    MW: 34604.2 Da    PI: 10.0654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-1461105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_009111444.1  61 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 105
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1755111IPR009057Homeodomain-like
PROSITE profilePS5129415.656110IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-758111IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-1859108IPR006447Myb domain, plants
SMARTSM007171.3E-1160108IPR001005SANT/Myb domain
PfamPF002492.1E-1261105IPR001005SANT/Myb domain
CDDcd001673.55E-963106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVSLNARPAP FLDPVSVSFD SMASDSSDGF GFTPIATTPV TGRRDTASYK IRKPYTIKKS  60
RENWTEQEHD KFLEALHLFD RDWKKIEAFV GSKTVVQIRS HAQKYFLKVQ KSGANEHLPP  120
PRPKRKARHP YPQKASKNVA LPSHAVCSIP SSNAPLLQPA YLYSSSDSQS LLGNPASSSS  180
SLNHESTNLP KPVIQEEPGV SATALPKNRC YSTSNKEVKP NLPTVTEPNN EEQSCEKPHR  240
VMPNFAQVYR FIGSVFDPNT SGHIQRLKQM DPINIETVLL LMRNLSVNLT SPEFTEQRKL  300
ISSYSSKALK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.102500.0bud| root| silique
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372121e-73AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene).
GenBankAY5195131e-73AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
GenBankBT0247111e-73BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111444.10.0PREDICTED: protein REVEILLE 5
SwissprotC0SVG51e-152RVE5_ARATH; Protein REVEILLE 5
TrEMBLM4F8F30.0M4F8F3_BRARP; Uncharacterized protein
STRINGBra037365.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-117MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]