PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009111401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 298aa MW: 33473.6 Da PI: 7.953 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.2 | 1.5e-37 | 63 | 121 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk XP_009111401.1 63 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 121 67899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 62 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.4E-33 | 65 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.444 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 69 | 105 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDHHHYTHHD HDQYQHHQMT ITNNNSYNTI ITTPPPRTTT TVDSTTMIMD AEKKMMTTMT 60 SRPQEPRNCP RCNSSNTKFC YYNNYSLAQP RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK 120 KLPLLQPNSS SSSPAKNLPD LNPPFAFTSS SSTSTSSNPS KSTHQNNNDL SLSFSYPTMQ 180 ERAQGHYGHF TDQAMSGGQN CLFSAPMGMI QFRQDYGHDH NKTDIGFSLD SNKVDSNNQN 240 NFLVNGGGSK LMFPYGDRDE HHHDHERHDD GNKKRESGSS NELWSGIILG GDSGGPTW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009111401.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111400.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Refseq | XP_009111401.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Swissprot | Q9M161 | 1e-137 | DOF41_ARATH; Dof zinc finger protein DOF4.1 | ||||
TrEMBL | M4F8I9 | 0.0 | M4F8I9_BRARP; Uncharacterized protein | ||||
STRING | Bra037401.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 1e-112 | Dof family protein |