PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111400.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 298aa    MW: 33473.6 Da    PI: 7.953
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.21.5e-3763121260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk
  XP_009111400.1  63 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 121
                     67899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2862119IPR003851Zinc finger, Dof-type
PfamPF027018.4E-3365121IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.44467121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDHHHYTHHD HDQYQHHQMT ITNNNSYNTI ITTPPPRTTT TVDSTTMIMD AEKKMMTTMT  60
SRPQEPRNCP RCNSSNTKFC YYNNYSLAQP RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK  120
KLPLLQPNSS SSSPAKNLPD LNPPFAFTSS SSTSTSSNPS KSTHQNNNDL SLSFSYPTMQ  180
ERAQGHYGHF TDQAMSGGQN CLFSAPMGMI QFRQDYGHDH NKTDIGFSLD SNKVDSNNQN  240
NFLVNGGGSK LMFPYGDRDE HHHDHERHDD GNKKRESGSS NELWSGIILG GDSGGPTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111400.10.0PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_009111401.10.0PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1611e-137DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLM4F8I90.0M4F8I9_BRARP; Uncharacterized protein
STRINGBra037401.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.11e-112Dof family protein