PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111377.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 310aa    MW: 35686.7 Da    PI: 7.3255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.53e-2921107185
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+kvlt+sdv+k++rlv+pk++ae++   +++ e++++l ++d++g+ W++++ y+ +s++yv+tkGW +Fvk+++L++gD++ F+++
  XP_009111377.1  21 FDKVLTTSDVGKLNRLVIPKQHAENYfplEEI-ENGTMLEFQDRNGKMWKFRYLYWSSSQSYVMTKGWVRFVKDKNLESGDTISFHRS 107
                     89*********************999*97555.4678************************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-3518106IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-2719107No hitNo description
SuperFamilySSF1019361.57E-2919106IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-2621107IPR003340B3 DNA binding domain
PROSITE profilePS5086314.31121123IPR003340B3 DNA binding domain
SMARTSM010195.3E-2221130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASGSGSNSN DFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIENGTMLEF  60
QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD TISFHRSYVP DDTEPGKRIK  120
KLYVDWRHRA DRNLVHNINH HHHYPLLMPP TYPTAGYYPL SGYSMPHYQR LPPFYHNQFQ  180
ERDFSGYGYG GPYYARSPLD HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS ARLPPYPPPH  240
QPPQEGTAKK LRLFGVDVEE SSSSGEARGE MAVAGYSSSS PVVIRDEESS SAMQLSEDEE  300
YKRKGKSIDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-43141291113B3 domain-containing transcription factor NGA1
5os9_B1e-43141291113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111377.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111377.10.0PREDICTED: B3 domain-containing transcription factor NGA4
RefseqXP_013665616.10.0B3 domain-containing transcription factor NGA4
SwissprotO825951e-133NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A078IJP90.0A0A078IJP9_BRANA; BnaA09g03240D protein
TrEMBLA0A397KW800.0A0A397KW80_BRACM; Uncharacterized protein
TrEMBLM4F8K50.0M4F8K5_BRARP; Uncharacterized protein
STRINGBra037417.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-123B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]