PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111266.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 394aa    MW: 43202.6 Da    PI: 4.9874
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.96.1e-15198251356
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     ++k+ rr+ +NRe+ArrsR+RK++++  Le+ v eL++e ++L k+l++++ ++
  XP_009111266.1 198 DVKKSRRMLSNRESARRSRRRKQEQTCDLETQVNELKGEHSSLLKQLSNMNHKY 251
                     789*****************************************9888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-19196260IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-12197250No hitNo description
PROSITE profilePS5021710.944198252IPR004827Basic-leucine zipper domain
PfamPF001703.0E-14198252IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-11199250No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF124989.6E-13267358IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MNSIFSIDDF SDPFWESSPP LDSDSAKALT AEEWTVEMFF EEIASSVTSA PVGSNNNNNN  60
AIVGVSSAQS LPSVSGQNDF EEDSRFLRRD SDDYRRVLEN KLETECAATV VALTAGSVKP  120
EDSTGSPETL FQPALSSPLT QGSLVTPGEA GVTSSLLGEV KKTGVPMKQV TSGSSRDYSD  180
DDDLDEENET TGSLKPEDVK KSRRMLSNRE SARRSRRRKQ EQTCDLETQV NELKGEHSSL  240
LKQLSNMNHK YDDAAVGNRI LKADIETLRA KVKMAEETVK RVTGMNPMLL GRSNGHNNNN  300
NRMPLTGNSR MGGSSCIPPF QPQSNPNMGG LTTTILSPRL ENTFIPTPSL NSQTNSHLQR  360
IRPTQTHHAA PTTNPYGWTT ESQNDSTWPK KCVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212219RRSRRRKQ
2214219SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.98900.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in carpels and seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, trichomes, hydathodes, siliques, seeds, and flowers, mostly in vascular tissues. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111266.10.0PREDICTED: basic leucine zipper 10
RefseqXP_013722933.10.0basic leucine zipper 10-like
SwissprotO227630.0BZP10_ARATH; Basic leucine zipper 10
TrEMBLM4F5950.0M4F595_BRARP; Uncharacterized protein
STRINGBra036251.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148711720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.21e-180bZIP family protein
Publications ? help Back to Top
  1. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]