PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111204.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 354aa    MW: 39942.3 Da    PI: 7.0174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.25.2e-3154152194
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g++++
  XP_009111204.1  54 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVITKGWSRFVKEKKLDAGDIVSFQRGiGDESK 148
                     89***************************966677889*************************************************55466555 PP

                     ..EE CS
              B3  91 elvv 94 
                     +l++
  XP_009111204.1 149 RLKL 152
                     4443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-4247160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-3050154IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-2752154No hitNo description
PROSITE profilePS5086314.94554158IPR003340B3 DNA binding domain
SMARTSM010193.4E-2254156IPR003340B3 DNA binding domain
PfamPF023622.1E-2854153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDLSLAPATN SDQEQDRDQE LNSNIGATSS SSGTANNTNF PMMMIPPPEK EHMFDKVVTP  60
SDVGKLNRLV IPKQHAERYF PLDSSNNQNG TLLNFQDRNG KMWRFRYSYW NSSQSYVITK  120
GWSRFVKEKK LDAGDIVSFQ RGIGDESKRL KLYIDWRHRP NMMSVAQTHN QFGNFGFNFN  180
FPTTSQCFNR FHPLPEYNTV PIHRSLNHQR SYYYNNHGQE FVGYVYGNLA GRCYYTGGSP  240
FDQRSIVGSE PLVIESVPVV PGRLTPVILP PLPPPSMAGK RLRLFGVNME CGNNDNNQQE  300
ESWVLPRGEM GASSSSSALR LNLSSDHDDE DDNGDGDGDG GDQFAKKGKS SRFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-61481622116B3 domain-containing transcription factor NGA1
5os9_B1e-61481622116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648794.10.0B3 domain-containing transcription factor NGA3-like
RefseqXP_013705424.10.0B3 domain-containing transcription factor NGA3-like
RefseqXP_022568005.10.0B3 domain-containing transcription factor NGA3-like
SwissprotQ9MAN11e-175NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A0D3AZ760.0A0A0D3AZ76_BRAOL; Uncharacterized protein
STRINGBo3g001110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-168B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]