PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111035.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 149aa MW: 16643.9 Da PI: 7.5049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.4e-05	37	76	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++R d+ ++++ L++++ + +K + a++L+ A +YI L XP_009111035.1 37 KQRKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 76 78999999********999.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.747	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	27	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-11	35	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-4	37	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEFSREAGMM MENKQNVCSL EENSIKRHKS DLSFSSKQRK DKAGDRISAL QQIVSPYGKT 60 DTASVLQDAL HYIEFLHEQV KVLSAPYLQT MTAATQEELE QYSLRNRGLC LVPMEYTAGV 120 AQSNGADIWA PVKTPPSPAF GVKSQSPFR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.17233	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111035.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353054	1e-156	AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111035.1	1e-110	PREDICTED: transcription factor bHLH113-like isoform X2
Refseq	XP_009111036.1	1e-110	PREDICTED: transcription factor bHLH113-like isoform X2
Refseq	XP_009111037.1	1e-110	PREDICTED: transcription factor bHLH113-like isoform X2
Swissprot	Q7XJU2	3e-96	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A397YKG1	1e-108	A0A397YKG1_BRACM; Uncharacterized protein
STRING	Bra030622.1-P	1e-100	(Brassica rapa)
STRING	Bo8g005780.1	1e-104	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	1e-98	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]