PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110940.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 743aa    MW: 83061.9 Da    PI: 5.4937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.33.1e-1143687381373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k + 
  XP_009110940.1 368 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPFKKAAI 459
                     5789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ I++ +++++++Hi+Df+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++e+
  XP_009110940.1 460 IFANHSIMRLTANADTIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVHETGHRLARYCQRYKVPFEYNA-IAQKWET 553
                     ********************************************************99*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++++gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++ +P v++ +    ++n++ F++rf eal +ysalfd+ ++kl+re+e r 
  XP_009110940.1 554 IRVEDLKIEQGEFVVVNSLFRFKNLLDETVVVNSPRDAVLKLIRKANPSVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLAREDEMRL 648
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+e+ grei+nvvaceg+er+er e++++W++r+ +aGFk++pl+++ +++ kl +++ +++ + ++++ ++l++gWk+r +++ S+W
  XP_009110940.1 649 MFEKEFYGREIMNVVACEGTERVERPESYKQWQARVIRAGFKQLPLEKELMQNLKLKIENGYDKNFDIDQNGNWLLQGWKGRIVYASSVW 738
                     **************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.47342719IPR005202Transcription factor GRAS
PfamPF035141.1E-111368738IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGSYSGGSLD GFDFTSEFDN LPASNQTVDS SDGFYLDDPL LNFVSFDHSS APPPETYPQK  60
NVAAASGDRL ASPSDDSEFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ AAEKSLYEAL  120
GEQYPSSVEH GASYPEKLAE DSPDGSFPSG GGFSDYASTT TSSDSHWSLD GLENNNRPSW  180
LQTPFPSNFV FQSTSRSTSV NSGGNTASFG SSMFKDNELA MQFKRGVDEA SKFLPKSSQL  240
FIDVDSYVPK NTSEVFVKTE KKDESEHPPP PPPPPSNSRL TGKKKSHWRD EDEDLADERS  300
NKQSAVYVEE TELSEMFDKI LLCGGTGQPV CITDQKFPTE AKTRGKKSTA TTTNSNSSKG  360
SKKETADLRT LLVLCAQAVS VDDRRTANEM LRQIREHSSP LGNGSERLAH YFANSLEARL  420
AGTGTQIYTA LSSKKTSAAD MLKAYQTYIS VCPFKKAAII FANHSIMRLT ANADTIHIVD  480
FGISYGFQWP ALIHRLSFRP GGPPKLRITG IELPQRGFRP AEGVHETGHR LARYCQRYKV  540
PFEYNAIAQK WETIRVEDLK IEQGEFVVVN SLFRFKNLLD ETVVVNSPRD AVLKLIRKAN  600
PSVFIQAVLS GSYNAPFFVT RFREALFHYS ALFDMCDSKL AREDEMRLMF EKEFYGREIM  660
NVVACEGTER VERPESYKQW QARVIRAGFK QLPLEKELMQ NLKLKIENGY DKNFDIDQNG  720
NWLLQGWKGR IVYASSVWVP SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5237574225381Protein SCARECROW
5b3h_D1e-5237574225381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286KKKSH
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110940.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM4EPG80.0M4EPG8_BRARP; Uncharacterized protein
STRINGBra030688.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]