PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009110863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 218aa MW: 24412.4 Da PI: 6.1499 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.1 | 4.1e-56 | 47 | 150 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtdifdfl XP_009110863.1 47 QLQVFWQNQfkeIENTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFL 141 89******99999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_009110863.1 142 VDIVPREDL 150 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.19E-33 | 8 | 141 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.0E-38 | 61 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-22 | 69 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDQQEHGQSR AMNYGTNPYQ TGSVGPTAPS GQMAFHQHHQ QQQLTQQLQV FWQNQFKEIE 60 NTTDFKNHSL PLARIKKIMK ADEDVRMISA EAPVVFARAC EMFILELTLR SWNHTEENKR 120 RTLQKNDIAA AVTRTDIFDF LVDIVPREDL RDEVLGSIPR GTVPEASAAG YPYGYLPSGT 180 APVGNAGMVM GNPGSAYPPN LYMGQPMWQH QGPGQPDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-63 | 55 | 147 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRTLQKN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009110863.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316882 | 1e-173 | AK316882.2 Arabidopsis thaliana AT1G08970 mRNA, complete cds, clone: RAFL14-04-L24. | |||
GenBank | AY085860 | 1e-173 | AY085860.1 Arabidopsis thaliana clone 1911 mRNA, complete sequence. | |||
GenBank | AY126997 | 1e-173 | AY126997.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds. | |||
GenBank | AY143827 | 1e-173 | AY143827.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-173 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F7G19 | 1e-173 | AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110863.1 | 1e-165 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_009110864.1 | 1e-165 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_009110865.1 | 1e-165 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 1e-125 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | M4EPM9 | 1e-163 | M4EPM9_BRARP; Uncharacterized protein | ||||
STRING | Bra030749.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 1e-115 | nuclear factor Y, subunit C9 |