PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009110802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 847aa MW: 95803.5 Da PI: 6.6823 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.3e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_009110802.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 34.4 | 5.1e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l XP_009110802.1 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-11 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.5E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 7.91E-21 | 33 | 109 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 3.99E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.675 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.2E-53 | 407 | 659 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ESYEAADDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIGGRHK NRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT 240 TIEDLEGKRR ADVEAQLRRQ DVARNKIAER RDAPAAILQA NKLNDPEAVR KRSKLMLPPP 300 QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG 360 KGDAIMMEAE NLARLRDSQT PLLGGDNPEL HPSDFTGVTP RKKEIQTPNP MLTPSMTPSM 420 TPGGAGLTPR LGLTPSRDGS SFAVTPRGTP FRDELHINED MDMHESAKLE RQRREEARRS 480 LRSGLTGLPL PRNEYQIVAQ APPEESEEQE EKIEEDMSDK IAREKAEEEA RQQALLRKRS 540 KVLQRDLPRP PAASLELVKN SLLSANGDKS SVVPPTPEEV ADELVRKELL QLLEHDNAKY 600 PLDEKAEKKK GVKNRANSSG SQVSAIEDFE ENELVEADKM IKEEAQFLCV AMGNENKTLD 660 DFVKAHDDCV KDLMYFPTRN AYGPASVAVK AEKVAALQVE MENARKKMEE DEKKAEHMKA 720 KYKTYTKGHE KRAETVWSQI EASLKHIEIG GTEVECFKAL KRQEEMAASF RKKNLEEEVV 780 KQKETERKLQ ARYGELLSTL EKAEEIMVGF RAQALKQADV EDSHNLKEAK LATGEEENVT 840 IFTEASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIGGRHKNRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.2866 | 0.0 | leaf| seed| silique |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009110802.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189331 | 0.0 | AC189331.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037O12, complete sequence. | |||
GenBank | AC189519 | 0.0 | AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110802.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | M4EPS7 | 0.0 | M4EPS7_BRARP; Uncharacterized protein | ||||
STRING | Bra030798.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6453 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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