PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009110765.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 246aa MW: 28960 Da PI: 7.9306

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009110765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.7	1.1e-23	126	175	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e++s y+++pi++AAkeL+++lT+LK++CR +GI+RWPhRk sl XP_009110765.1 126 KPLSKETISLYYDMPIAQAAKELNIGLTLLKKKCRDLGIQRWPHRKFMSL 175 67999*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	106	195	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-19	128	175	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MMNSFSSLEC DKVFDKEDKP FSFLEYFSYQ SEFTNNFFGL EDEIISSGNY DYYLPSASNF 60 LALPDLEPIS IVSHEDLLNE YGSVSWTEKE SMFDEHQRED FDLVKKTETV KKRVREECAY 120 SSYVAKPLSK ETISLYYDMP IAQAAKELNI GLTLLKKKCR DLGIQRWPHR KFMSLDNLIE 180 NVKKLEKGEG NADEQRKKLE KLKKEKKRMK ESPDLEYEDK TKRLRQACYK ANHKRKRRLV 240 MSTSTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	207	KKLEKLKKEKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009110765.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	6e-50	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	6e-50	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110765.1	0.0	PREDICTED: protein RKD1
Refseq	XP_013654475.1	0.0	protein RKD1
Swissprot	Q9M9U9	8e-95	RKD1_ARATH; Protein RKD1
TrEMBL	A0A3P6CBW2	1e-166	A0A3P6CBW2_BRACM; Uncharacterized protein
TrEMBL	M4DJ64	1e-166	M4DJ64_BRARP; Uncharacterized protein
STRING	Bra016542.1-P	1e-167	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-84	RWP-RK domain-containing protein