PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110326.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 254aa    MW: 29508.2 Da    PI: 5.7161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEde+l+ +++++G+ +W++I+++ g+ R++k+c++rw++yl
   XP_009110326.1 14 KGEWIAEEDEKLIAYINEHGMCDWRSIPKRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding574.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e++++++  lG++ W++Ia++m  +Rt++++k++w++ 
   XP_009110326.1  67 RGKFTPQEEEKIIKVHGVLGNR-WAAIAKHME-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.402961IPR017930Myb domain
SuperFamilySSF466898.98E-2911108IPR009057Homeodomain-like
SMARTSM007174.8E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-241568IPR009057Homeodomain-like
CDDcd001673.42E-101661No hitNo description
PROSITE profilePS5129426.92562116IPR017930Myb domain
SMARTSM007175.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1667111IPR001005SANT/Myb domain
CDDcd001676.37E-1069109No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRKTWFNDD GMKKGEWIAE EDEKLIAYIN EHGMCDWRSI PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEKIIK VHGVLGNRWA AIAKHMENRT DNDIKNHWNS CLKKRLSRNG  120
IDPMTHEPVN NNLTVTTTYV ECGSSSTTTW PTRENHCSST PSGLVCVLNK LAAGISSRQY  180
DLNIIKNILL DPRITSSEQD EEEVLKRDQE IGGCEEEDFL IWDDEEVRRY METDDIEYET  240
TPYVSLLYES TRIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110326.10.0PREDICTED: transcription factor MYB34-like
RefseqXP_013655214.10.0transcription factor MYB106-like
SwissprotQ9LE635e-58MY106_ARATH; Transcription factor MYB106
TrEMBLA0A397YE840.0A0A397YE84_BRACM; Uncharacterized protein
TrEMBLM4DJ680.0M4DJ68_BRARP; Uncharacterized protein
STRINGBra016546.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-106myb domain protein 47