PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110318.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 435aa    MW: 47205.4 Da    PI: 6.6086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-063303641554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ ++++ L++l+ +      +K + a++L +A+eYIk L
  XP_009110318.1 330 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 364
                     899***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.328315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-4324370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-6325369No hitNo description
SuperFamilySSF474593.53E-11328380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-11329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHLQMIGL  60
GLSSQSHVDQ WNQSLLRGDS KAETGFGVML QENLNLDATS NANANTTSYQ LQESDPSHHH  120
ALWRDPHINN SDFKPQLNMT SSNNRGFFLD HQFSPHGSSS TDSSTVTCQG FSSDNPSNTL  180
YGPTATTPNS SSAMFHHHQA AGFNMPGSSD QQPSRTHQAS NLGYSQFGSS TGNYDQTALR  240
FSNNATFWNP TATAGNVGPT HHDASSNYFP ALQPPQIHAP SFDEQPKGMS EIKDLSSSEV  300
KRAGGDQPAA KRAKSEAASP SPPFKVKKEK MSDRIAALQQ LVSPFGKTDQ ASVLSEAIEY  360
IKFLHQQVSA LSNPYMNSGA SLQHQQSDHP KELEVSKEPD LRSQGLCLVP VSSTFPVTHD  420
TTVDFWTPTF GGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110318.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLM4E5850.0M4E585_BRARP; Uncharacterized protein
STRINGBra023939.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]