PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009110034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 335aa MW: 37956.8 Da PI: 7.8045 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.1 | 7e-37 | 104 | 163 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynny++sqPr+fC+ C+ryWt GG++r vPvG+grrknk + XP_009110034.1 104 PDKILPCPRCNSGDTKFCYYNNYNVSQPRHFCRHCQRYWTSGGSMRSVPVGSGRRKNKGW 163 7899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-28 | 104 | 161 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-30 | 106 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.071 | 108 | 162 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 110 | 146 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MSELRDTPIK LFGWTITSSL SPVLKDSSDH SMEYSSSSSF PSLGLHMMNN QSATDNSEQD 60 ITSLNISSDL NKESKETSEN SYDQHSEITT TTTSEEKTTE LKKPDKILPC PRCNSGDTKF 120 CYYNNYNVSQ PRHFCRHCQR YWTSGGSMRS VPVGSGRRKN KGWVSTDNYK HISSENNDYN 180 SSSTKILSFE SSDSCISEKG KHQPSDSNIT KYSVSQDFKK FHGFLPVQVT SSVSPPWPYH 240 QYPLNPSFYH IPVYWGYTVP VSSTLETSTC LGKRTRDELH TKMLESKDTS VRARLDSPSE 300 SINDDVSVED RATQQRATTG RACNVKHTLR RREIQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009110034.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189385 | 1e-164 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110034.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.3-like | ||||
Swissprot | Q9LQX4 | 1e-133 | DOF13_ARATH; Dof zinc finger protein DOF1.3 | ||||
TrEMBL | A0A397YDF7 | 0.0 | A0A397YDF7_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra016286.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14082 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26790.1 | 1e-124 | Dof family protein |