PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110008.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 273aa    MW: 30917.6 Da    PI: 5.5064
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.7e-18177210134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  XP_009110008.1 177 CSHCGTNTTPQWRTGPVGPKTLCNACGVRFKSGR 210
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-797267IPR016679Transcription factor, GATA, plant
SMARTSM004011.3E-14171221IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14174234No hitNo description
Gene3DG3DSA:3.30.50.106.5E-14175208IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.123175207IPR000679Zinc finger, GATA-type
CDDcd002021.23E-15176233No hitNo description
PfamPF003206.1E-16177211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK HQVIVSEELS RTSSAEDFSV ECFLDFSEVQ EEEEELVSIS  60
SSQEEQEQDC CNNSSQPCIF DQLPSLPDGD VEELEWVSRV VDDCSSQEVS LLFTQTLKTK  120
PNFSSRVPVK PRTKRPRNSL TGDRVWPLVS TNQHAAGEQQ WRKKKKQEPV IVFQRRCSHC  180
GTNTTPQWRT GPVGPKTLCN ACGVRFKSGR LCPEYRPADS PTFSNEIHSN LHRKVLELRK  240
SKELVEEETG EAITKTDQVK FGSQSGREDL GKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.269920.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895290.0AC189529.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110121.10.0PREDICTED: GATA transcription factor 3
RefseqXP_009110185.10.0PREDICTED: GATA transcription factor 3
RefseqXP_013648406.10.0GATA transcription factor 3
RefseqXP_013648485.10.0GATA transcription factor 3
RefseqXP_022546471.10.0GATA transcription factor 3
SwissprotQ8L4M61e-138GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A398AI470.0A0A398AI47_BRACM; GATA transcription factor
TrEMBLM4D4Z50.0M4D4Z5_BRARP; GATA transcription factor
STRINGBra011552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-127GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]