PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109826.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28212 Da    PI: 8.4334
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+iifs++gkl+e++s
  XP_009109826.1  9 KRIENTINRQVTFAKRRGGVLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 59
                    79***********************************************96 PP
2K-box92.29.2e-31911741598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s+qqe+ kLk++++ Lqr+qR+llGedL++Ls keL++Le+qL++slk+iR  +++++l+q+++lq ke++l+++nk+Lr +l
  XP_009109826.1  91 LSSQQEYLKLKQRYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRGLRTQFMLDQLNDLQSKERMLSDTNKTLRLRL 174
                     478*****************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.198161IPR002100Transcription factor, MADS-box
CDDcd002652.84E-43276No hitNo description
SuperFamilySSF554554.45E-32277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-31323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.83990180IPR002487Transcription factor, K-box
PfamPF014869.5E-2692174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENTINRQVT FAKRRGGVLK KAYELSVLCD AEVALIIFSN RGKLFEFCSN  60
SSMLKTLERY QKCNYGPPEP NVPSREALAE LSSQQEYLKL KQRYDALQRT QRNLLGEDLG  120
PLSTKELESL ERQLDSSLKQ IRGLRTQFML DQLNDLQSKE RMLSDTNKTL RLRLADGYQM  180
PFQLNPNQEE VHVDYGHHQP QQQAFFQPLE YEPIFQMGYH QGQQQDHGMG AGPSANNYML  240
GWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-61751771104Developmental protein SEPALLATA 3
4ox0_B3e-61751771104Developmental protein SEPALLATA 3
4ox0_C3e-61751771104Developmental protein SEPALLATA 3
4ox0_D3e-61751771104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9679600.0KC967960.1 Brassica oleracea var. viridis SEP3 (SEP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109826.10.0PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2
RefseqXP_013659831.10.0agamous-like MADS-box protein AGL9 homolog isoform X4
SwissprotO040671e-155AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A397YD881e-180A0A397YD88_BRACM; Uncharacterized protein
TrEMBLM4D3A11e-180M4D3A1_BRARP; Uncharacterized protein
STRINGBra010955.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-145MIKC_MADS family protein
Publications ? help Back to Top
  1. Bonhomme F,Sommer H,Bernier G,Jacqmard A
    Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis.
    Plant Mol. Biol., 1997. 34(4): p. 573-82
    [PMID:9247539]