PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009109815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 366aa MW: 41013.3 Da PI: 6.441 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.1 | 1.2e-38 | 151 | 225 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +Cq++gCe dls+ak+yhr+h+vC+ hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL +hn+rrrk XP_009109815.1 151 RCQIDGCELDLSSAKDYHRKHRVCDNHSKCPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLTHHNARRRK 225 6*************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-31 | 144 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.052 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-36 | 150 | 226 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-29 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDCNMASPTW DWDHLIMSNP SKTENDENQQ PSAEWEIEKG EGIESMLFPC FDGLEKVSSG 60 SPSGFWHSQS TSTNSSSPKV KQTNLASESS PGDSCSNVDS VQVKASTAAE SDLCLELGKQ 120 TYSEEFWCRD NNDLQAVSMN ARKKQSVQVP RCQIDGCELD LSSAKDYHRK HRVCDNHSKC 180 PKVTVGGLER RFCQQCSRLH AVSEFDEKKR SCRKRLTHHN ARRRKLPGMF PLNPERVCNP 240 RQHTNMLWNE LSLNTESEET FAWDTTYDTK PTQIESGFTL SFQRGHGRPD EQVVAGSSRS 300 FSPYQTSGGF QLPSKGVGEY SGGLNESQDF YSALSLLSTS SDSRGTKHNP MVESQPIHGT 360 FPTHFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-24 | 152 | 225 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 224 | KKRSCRKRLTHHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009109815.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109814.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X2 | ||||
Swissprot | Q8S9L0 | 1e-175 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | M4D395 | 0.0 | M4D395_BRARP; Uncharacterized protein | ||||
STRING | Bra010949.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 1e-168 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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