PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109737.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 324aa    MW: 35061.1 Da    PI: 9.3699
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.75.3e-3843102362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +lkcprCds+ntkfCyynnyslsqPryfCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  XP_009109737.1  43 PPQLKCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTQGGTLRNVPVGGSYRKNKRVK 102
                     5689*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.6E-3345100IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-2546100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.72346100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MFGNCDQKNK MPMISSPNTN PLASMQSKNM IVAPSHQQQQ QQPPQLKCPR CDSSNTKFCY  60
YNNYSLSQPR YFCKACKRYW TQGGTLRNVP VGGSYRKNKR VKRPATTTVA STASTTTSSS  120
PNNPHHQISQ FSSVNHHPLL YGLSDHVSSC NNLPMMVPSR FSDSSKTSSS SGLESEFISS  180
GYSGLGALGL GLPHYLTHDH TINGSFINNS TTNKPFLLSG LVGSSVSSSS STLLQHPHKT  240
INNGGEMMGQ SHIRTLAPLP HVGGNTDDMN KEGKLDQISG NINGFMSSSS LNPSNYNNIW  300
NNASVVNGAC LDLTNNDVGS FLTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109737.10.0PREDICTED: dof zinc finger protein DOF1.4-like
SwissprotQ9FZA41e-136DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A3P6BLH10.0A0A3P6BLH1_BRACM; Uncharacterized protein
STRINGBra010884.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-111Dof family protein