PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109684.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 175aa MW: 19427.1 Da PI: 9.7888

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	59	118	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGalrnvPvG+grrk k+ XP_009109684.1 59 PDKIIACPRCKSMETKFCYFNNYNVKQPRHFCRGCQRYWTAGGALRNVPVGAGRRKAKHP 118 68999***************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	58	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	61	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.754	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010214	Biological Process	seed coat development
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MATQDSQGIK LFGKTITFNA SNITTTTIKK EVHQQQPELQ ATTDVRSSST DLTAVEKRPD 60 KIIACPRCKS METKFCYFNN YNVKQPRHFC RGCQRYWTAG GALRNVPVGA GRRKAKHPGR 120 VGGFAEFLGA ATGAVDQVEL DALLVEEWRA AASHGGFRHD FPVKRLRCYT DGQSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00166	DAP	Transfer from AT1G29160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109684.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109684.1	1e-130	PREDICTED: dof zinc finger protein DOF1.5-like
Swissprot	P68350	1e-102	DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBL	M4D2Z5	1e-129	M4D2Z5_BRARP; Uncharacterized protein
STRING	Bra010848.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2809	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-105	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]