PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109674.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 200aa    MW: 21518.9 Da    PI: 9.6093
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.1e-392584362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +++l+cprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s
  XP_009109674.1 25 QEQLNCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGTRKNAKRS 84
                    7899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.9E-332682IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-252883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3112882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQDPAAYYQS MMAKQQQQQP QFPVQEQLNC PRCDSPNTKF CYYNNYNLSQ PRHFCKSCRR  60
YWTKGGALRN VPVGGGTRKN AKRSTSSPTS PSNNKKTKNT DPDPNSQTGN KPDTDPTRML  120
YGFPIGDQDV KGMEMGGGGG SFSSLLASNM QLGLGGIILD GSGWDPGMGL RRSEAGNGGG  180
GGGGGGNPWT DLALNRVEKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.38711e-165flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893440.0AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109674.11e-146PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ94AR62e-85DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A3P5ZWV01e-144A0A3P5ZWV0_BRACM; Uncharacterized protein
TrEMBLM4E5341e-144M4E534_BRARP; Uncharacterized protein
STRINGBra023888.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.15e-67DOF zinc finger protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]