PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009109505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | DBB | ||||||||
Protein Properties | Length: 241aa MW: 26718.7 Da PI: 6.422 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.7 | 1.8e-06 | 5 | 42 | 6 | 37 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.......H 37 C+ ++++e++ fC ++ lC+ C + H H XP_009109505.1 5 CDVCDKEEASVFCCADEAALCNGCDRHVH-FanklagkH 42 **************************999.323455555 PP | |||||||
2 | zf-B_box | 29.2 | 1.9e-09 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++ C+ +++ ++ lfC++++ lC++C +H+ Ht XP_009109505.1 55 APLCDICGKRRALLFCQEDRAILCRECDIPIHQAneHT 92 789*****************************767876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.025 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.07E-7 | 5 | 47 | No hit | No description |
SMART | SM00336 | 1.2E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.196 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.3E-8 | 55 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.01E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHQRFSLTSP TFKDAPLCDI 60 CGKRRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGVKISASPS TYPKASNSIS 120 TTVLSRAKTR PKSVSGEVPS SASSEVFASS PSTTTSNYYY GLDENYHQVS DSGSGSGGTG 180 SISEYLMETL PGWRVEDLLE HPSCVSHEDN IISTNNNESY MVYDGSLQYH HQGFWEQKPF 240 S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009109505.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109505.1 | 0.0 | PREDICTED: B-box zinc finger protein 20 | ||||
Refseq | XP_013656683.1 | 0.0 | B-box zinc finger protein 20 | ||||
Swissprot | Q0IGM7 | 1e-143 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | M4D2L0 | 0.0 | M4D2L0_BRARP; Uncharacterized protein | ||||
STRING | Bra010713.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 1e-129 | DBB family protein |
Publications ? help Back to Top | |||
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