PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109469.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 296aa    MW: 33899.4 Da    PI: 8.1092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32215273159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H h+
  XP_009109469.1 215 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQEKCRVKKRVERLADDPRMVITTYEGRHLHS 273
                     59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33200273IPR003657WRKY domain
SuperFamilySSF1182902.62E-28208274IPR003657WRKY domain
PROSITE profilePS5081129.505210275IPR003657WRKY domain
SMARTSM007745.4E-37215274IPR003657WRKY domain
PfamPF031062.6E-25216272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSTINQGVSL FDEPQNIINT NNTNTLGFFF SFPNHTLSSS SSPSSLVSPF LGHHSFNSFI  60
HNNSPSFVTH PRDPINPMAN LPETLISVSS LASSKQRHDH DGIVNLDQHR LTGEISSQRP  120
SLNPWAWSSQ AGYEYNKKNN HTSEIDVDHN IDHDGCDGDG SNDDDDHQHH ETRRHKINTS  180
PLGIMSTLKM KKPKTRKKVR EPRFCFKTLS DVDVLDDGYR WRKYGQKVVK NTQHPRSYYR  240
CTQEKCRVKK RVERLADDPR MVITTYEGRH LHSPSNHLDD DPLSSSHHSS LSNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-25207272974Probable WRKY transcription factor 4
2lex_A7e-25207272974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931400.0KM593140.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109469.10.0PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB71e-139WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A3P6BUA50.0A0A3P6BUA5_BRACM; Uncharacterized protein
TrEMBLM4D2I30.0M4D2I3_BRARP; Uncharacterized protein
STRINGBra010683.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-108WRKY DNA-binding protein 13