PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109399.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 334aa    MW: 38013.5 Da    PI: 7.1196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12157203455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  XP_009109399.1 157 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAQKHIKYLQ 203
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16157217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-11158206No hitNo description
SuperFamilySSF474592.88E-16158222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNMLSTRLFS DQELEENGII QQYGMNTIMG EIHEAHHTLP HSFPTRMLTT NDPSYDDLID  60
MKPSKILETT YISPKLQPPP SFPLPPYSKP HFHHQPSSRI LSFENATQNV MDNELSPTYQ  120
NSIFSPKVEA EVPPNWMNGK GTKRAQPSYK SQSNAQDHII AERKRREKLT QRFVALSALV  180
PGLKKMDKAS VLGDAQKHIK YLQEKVGEFE EQKRERRLES MVLVKKSKLI LDDNNQSTSS  240
SCCEDDSSTL DLPEIEVKFS DKDVLIKILC EKQKGHVAKI MAEVEKFHFS ITNSSVLPFG  300
PTLDITIIAK KESDFDMTLM DVVKSLRSAL SKFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109399.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885671e-177AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109399.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0721e-175BH025_ARATH; Transcription factor bHLH25
TrEMBLM4D2B70.0M4D2B7_BRARP; Uncharacterized protein
STRINGBra010617.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-164bHLH family protein