PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109350.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 321aa MW: 37030.8 Da PI: 9.1469

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.8	2.4e-28	193	247	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++L +rFv+a++++GGs++AtPk+i++ mkv+gLt+++vkSHLQkYR++ XP_009109350.1 193 QRRRWSQDLRRRFVDALRRIGGSQVATPKQIRDEMKVDGLTNDEVKSHLQKYRMH 247 8****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.134	189	249	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-25	190	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-14	190	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	193	247	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-5	194	245	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVQTDKDRRM SLNLNLSMYS IAKPLSQFLD EVSRIKDNHS KLSEIDVYVG KLEEERKKID 60 VFKRELPLCM LLLNEAIERL KEEASSVMMA SNGKLDVGQG SKLENDYKKN WMSSAQLWIS 120 NSNSTNKEED RCVTQTPFQT CNNLNQGGAF LPFKPPPAPL PLMTPMMDCN RTEQNHQFNK 180 PLQSHHHIPK KEQRRRWSQD LRRRFVDALR RIGGSQVATP KQIRDEMKVD GLTNDEVKSH 240 LQKYRMHIRK HPLSSSDQPR ETQSLISLSR SGSPQSPLVG RGLFNNNGSH ISEDDEEEEK 300 SDGRSWRGES DKKRQVVDFE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	194	PKKEQRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.14814	1e-104	bud\| flower\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269\|PubMed:26903506}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ973839	1e-116	DQ973839.1 Brassica napus clone PBCESTNA15 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109350.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	F4JRB0	1e-145	HHO5_ARATH; Transcription factor HHO5
TrEMBL	A0A3P6CBA5	0.0	A0A3P6CBA5_BRACM; Uncharacterized protein
STRING	Bra010581.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-135	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]