PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109345.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 661aa    MW: 72955.3 Da    PI: 7.1781
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094614981954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_009109345.1 461 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 498
                     664559******************************88 PP
2BELL122.51.7e-39319390172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  XP_009109345.1 319 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 390
                     589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-76250388IPR006563POX domain
PfamPF075262.4E-49255387IPR006563POX domain
PROSITE profilePS5007112.568439502IPR001356Homeobox domain
SMARTSM003891.2E-9442506IPR001356Homeobox domain
CDDcd000864.78E-12442503No hitNo description
SuperFamilySSF466892.69E-17443509IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29445508IPR009057Homeodomain-like
PfamPF059203.2E-18459498IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MSQDYHHHHH QQHQGGIISF SNGFDRLDST SLTTQQKQEH QRIKMDEESS VAGSGIPVYE  60
TAGILSDMFN FPGSSGAVGG GDLDHDQSFR SNRQFLEKQH HNIPADSAAA MQLFLMNPPQ  120
QPPSPASTTT TRSHHNNSST LHMLLPNPSH QQGYTNTMSM HQIPHQHHHQ QLTWQSPSSS  180
DHHHHHNSQT GGQGLSLSLS SSLEAAAKAE EYRNIYYGNS SSNSRTLLTD YPQHHLRSSP  240
VAAAASSSSV GAINIIRSSR YTTAAQELLE EFCTVGRGFS KKTKLRNSSN PNTSGGDGGS  300
GSPSSAGAIK DQSPLSASDR IEHQRRKVKL LTMLEEVDRR YNHYCEQMQM VVNSFDIVMG  360
HGAALPYTAL AQKAMSRHFR CLKDAVAAQL RQSCELLGDK DAAGISSSGL TKGETPRLRL  420
LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ  480
TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ESKELEENEQ DQETKNSNSD KSTKPNNDDS  540
NFTPVRTTSQ TSMTAAQSAT TAPDADAAVA TGHRLRSSSD INAYENDPSS SYTNVAAVSS  600
YAGSTAFSAV ATCQKGIGGF DDTDMDGGNV IRFGTNPTGD VSLTLGLRHV SNMPDQRFFL  660
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16448506563Homeobox protein Meis2
3k2a_B1e-16448506563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.36995e-52leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBankAY0504590.0AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109344.20.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A397YM210.0A0A397YM21_BRACM; Uncharacterized protein
STRINGBo3g153820.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]