PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109318.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 424aa    MW: 49042.1 Da    PI: 8.5637
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07428126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  + ++G C+  ++C+FaHg
  XP_009109318.1  4 YKTKLCILYEKNGDCSK-PNCTFAHG 28
                    9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.2E-5233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-10234IPR000571Zinc finger, CCCH-type
SMARTSM003560.0094329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.225330IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-5428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSLYKTKLCI LYEKNGDCSK PNCTFAHGVA ELRLPGESSS FRGRRHNLDG DLRDKLGRHF  60
SPERRPSLDR SGRRVQRFNG HENPRSFEKR RDVDYRENRR FDERSDYAGG LKSGSRIEVR  120
ERDERNKFLG YNNVLEEQLK DVELDVKMLT DNKLRLEAAV ERKAREADIL TSRIQELRTQ  180
LDREKEECKR ITSSTKKFVK EYNRFLRAQD DVKRSEARLQ KLGTQLSTYL LGNEGNDRET  240
DIEIVSDEEK NGRNLRSASD LQNELHNTSS VSRKRHYVEQ QYTTKESVQD ALRGRGEEDK  300
LENGKSPSRW NRVPSKSFSE EESRVRNEED AMNKSSSKED TWKRRRLSSG TSSSNKVMSS  360
TSMAARVSDE VAEFDEENTR AAKGSPLISL PPPPPFRDAH FHGDEEEAKV DVNEQRKADD  420
VDSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109318.10.0PREDICTED: zinc finger CCCH domain-containing protein 40
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLA0A398AQR10.0A0A398AQR1_BRACM; Uncharacterized protein
STRINGBra023860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein