PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109306.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 351aa    MW: 38274.1 Da    PI: 8.3525
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.1e-3950110262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     k++a++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  XP_009109306.1  50 KDQAINCPRCNSVNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 110
                     7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2739102IPR003851Zinc finger, Dof-type
PfamPF027015.4E-3351108IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.41654108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDTAQWPQIV VKPLEEIVTN TCLTPRASQP QPPPSVGAAG VAERKTRPEK DQAINCPRCN  60
SVNTKFCYYN NYSLTQPRFF CKGCRRYWTE GGSLRNIPVG GGSRKNKRSH SSSISSSLDI  120
SKNHSDSTQP ATKKHHSDHH PHHHLMSISQ QGLTGQNPKI FETTQQNLKL GFPPHGLIRT  180
NFTDLIHNTG NNNTSTNNPF IGSSCSATSA LATSPLDLIR NNNCNNRNTS NSSFMGFPVH  240
NQGPTSEGFS MQDHYKPSNS NTTLLGFSLD HHHDNSEFHG GFQGGEGREV GDDVNGRHLF  300
PFEDLKLPVS SSSSATINID VNDHQKRASG GDAAATSGGY WTGMLSGGSW C
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109306.10.0PREDICTED: dof zinc finger protein DOF4.6-like isoform X3
SwissprotQ8LAP81e-164DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A3P6BTC80.0A0A3P6BTC8_BRACM; Uncharacterized protein
STRINGBra010548.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-134Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]